Basic Information
Locus ID:
Sbi_jg55952
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 9214228 | 9215892 | + | Sbi_jg55952 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.83 | 32,738.55 Da | 43.05 | 85.20 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 244 | 288 | 1.2E-11 | IPR001841 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 76 | 148 | 5.0E-7 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 226 | 290 | 3.79E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 211 | 292 | 2.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 246 | 287 | 2.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 246 | 288 | 12.25323 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010671482.3 | RING-H2 finger protein ATL20 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A803L2N9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology