Basic Information
Locus ID:
Sbi_jg55833
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 7472896 | 7478391 | - | Sbi_jg55833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 28,725.64 Da | 46.30 | 56.69 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 161 | 243 | 7.54869E-38 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 163 | 232 | 9.4E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 121 | 232 | 5.78E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 157 | 247 | 8.0E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 162 | 240 | 3.9E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 161 | 247 | 11.844008 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_021774992.1 | nuclear speckle RNA-binding protein A-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RJL1 | RRM domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_058860 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology