Basic Information
Locus ID:
Sbi_jg55801
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 7170188 | 7177800 | - | Sbi_jg55801 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 61,201.68 Da | 33.57 | 86.03 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13961 | Domain of unknown function (DUF4219) | 15 | 41 | 3.8E-10 | IPR025314 |
| Pfam | PF00069 | Protein kinase domain | 320 | 495 | 7.7E-33 | IPR000719 |
| Pfam | PF13976 | GAG-pre-integrase domain | 232 | 266 | 7.4E-9 | IPR025724 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 318 | 500 | 3.91E-57 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 396 | 503 | 1.3E-30 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 281 | 395 | 5.2E-29 | - |
| SMART | SM00220 | serkin_6 | 318 | 537 | 1.8E-13 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 318 | 544 | 32.258747 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 324 | 346 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 443 | 455 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_021750179.1 | uncharacterized protein LOC110715866 [Chenopodium quinoa] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9E1A9 | Receptor protein serine/threonine kinase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21673 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah001861, Ah017648, Ah030750, Ah031846, Ah031859, Ah039403 |
| Amaranthaceae | Salicornia bigelovii | 26 | Sbi_jg12779, Sbi_jg15929, Sbi_jg21414, Sbi_jg22691 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3700, Seu_jg3701 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53448, Sgl58710 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000046401 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112232 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G20980.1, AT3G21000.1 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g18980.v2.2, Sp3g19000.v2.2 |
| Brassicaceae | Brassica nigra | 10 | BniB01g028750.2N, BniB01g042720.2N, BniB05g058560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0702 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4280 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0529820 |
| Poaceae | Oryza coarctata | 1 | Oco24G009900 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G274800 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29840 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9792 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-22576, nbisL1-mrna-22910, nbisL1-mrna-2476 |
| Solanaceae | Lycium barbarum | 8 | gene-LOC132601344, gene-LOC132601735, gene-LOC132607958 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001288, gene-LOC107006700 |