Basic Information
Locus ID:
Sbi_jg55732
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
L-type lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 5918254 | 5921232 | - | Sbi_jg55732 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 75,751.35 Da | 44.83 | 82.54 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 20 | 273 | 6.03988E-68 | IPR001220 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 384 | 527 | 1.2E-14 | IPR001245 |
| Pfam | PF00139 | Legume lectin domain | 34 | 275 | 1.2E-47 | IPR001220 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 362 | 660 | 5.27E-42 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 35 | 276 | 4.34E-50 | IPR013320 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 354 | 459 | 2.8E-20 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 19 | 281 | 4.4E-59 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 533 | 659 | 2.1E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 460 | 532 | 1.6E-11 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 380 | 650 | 18.153015 | IPR000719 |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 159 | 165 | - | IPR019825 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 367 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55830.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_021725716.1 | probable L-type lectin-domain containing receptor kinase S.7 [Chenopodium quinoa] | 0 |
| Q9FHG4 | Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana OX=3702 GN=LECRKS7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L270 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13806, jg2103 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16326 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018451 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g050710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14927, Sbi_jg55732 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26256 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017886 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01175, Sgl06262 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000045054 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0006630, CQ.Regalona.r1.3BG0006640 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G28214 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1309 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16377 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.302, evm.TU.LG09.1536 |
| Salicaceae | Populus euphratica | 1 | populus_peu27946 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632200 |
| Solanaceae | Solanum chilense | 1 | SOLCI000118400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014820, gene-LOC107014837 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13433_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1273 |