Basic Information
Locus ID:
Sbi_jg55645
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 4365664 | 4375260 | + | Sbi_jg55645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.44 | 95,016.49 Da | 44.20 | 75.94 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 372 | 428 | 3.03697E-30 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 436 | 796 | 9.5E-37 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 374 | 429 | 5.1E-10 | IPR023780 |
| Pfam | PF01426 | BAH domain | 112 | 219 | 5.2E-11 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 261 | 796 | 2.13E-80 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 369 | 432 | 5.33E-13 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 251 | 350 | 8.3E-15 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 47 | 210 | 6.1E-46 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 591 | 762 | 3.1E-201 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 371 | 814 | 3.1E-201 | - |
| SMART | SM00439 | BAH_4 | 108 | 225 | 1.3E-16 | IPR001025 |
| SMART | SM00298 | chromo_7 | 372 | 431 | 8.4E-10 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 440 | 793 | 6.1E-30 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 262 | 803 | 48.048695 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 108 | 225 | 16.999451 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 373 | 429 | 11.562001 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 443 | 455 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 396 | 416 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 486 | 500 | 3.6E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 263 | 279 | 3.6E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 532 | 545 | 3.6E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 371 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021762079.1 | DNA (cytosine-5)-methyltransferase CMT2-like isoform X2 [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A803L224 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology