Basic Information
Locus ID:
Sbi_jg55416
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000004l | 416671 | 449648 | + | Sbi_jg55416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 86,953.70 Da | 38.42 | 86.54 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 263 | 3.63177E-68 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 9 | 44 | 0.0085 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 135 | 171 | 1.2E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 213 | 1.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 52 | 87 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 129 | 1.3E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 635 | 791 | 2.7E-52 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 294 | 2.01E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 338 | 3.0E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 137 | 2.7E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 216 | 254 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 171 | 5.3E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 45 | 5.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 129 | 1.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 213 | 5.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 87 | 4.1E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 55 | 96 | 15.420926 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 97 | 131 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 12 | 44 | 8.597424 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 12 | 54 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 55 | 89 | 11.497408 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 216 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 222 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 139 | 180 | 18.69591 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 139 | 176 | 14.371031 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 158 | 172 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 74 | 88 | 1.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 1.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 116 | 130 | 1.0E-6 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 795 | 20.530664 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 373 | - | - |
| Coils | Coil | Coil | 782 | 797 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021841902.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Spinacia oleracea] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RHA8 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_071810 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology