halophFGD

Basic Information

Locus ID: Sbi_jg55289

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: mechanosensitive ion channel

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000006l	127672377	127676322	-	Sbi_jg55289

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.91	84,217.19 Da	57.73	77.29	-0.57

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00924	Mechanosensitive ion channel	511	715	2.0E-23	IPR006685
SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	558	618	2.06E-12	IPR010920
Gene3D	G3DSA:2.30.30.60	-	569	618	3.5E-11	IPR023408
PIRSF	PIRSF017209	Memb_At2g17000	318	744	3.6E-169	IPR016688
PIRSF	PIRSF017209	Memb_At2g17000	2	292	1.8E-4	IPR016688
MobiDBLite	mobidb-lite	consensus disorder prediction	1	36	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	323	368	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	51	99	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	143	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	234	261	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	188	269	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	193	227	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	328	342	-	-

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K22048 (mechanosensitive ion channel protein 4/5/6/7/8/9/10)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G78610.1	mechanosensitive channel of small conductance-like 6.
RefSeq	XP_021757867.1	mechanosensitive ion channel protein 6-like [Chenopodium quinoa]
Swiss-Prot	Q9SYM1	Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana OX=3702 GN=MSL6 PE=1 SV=1
TrEMBL	A0A803NDT4	Mechanosensitive ion channel protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg12377, jg15377, jg23011, jg32884, jg36627, jg36971, jg7929 ... jg857
Aizoaceae	Mesembryanthemum crystallinum	11	gene_12610, gene_12991, gene_12992, gene_14311, gene_14911 ... gene_15084, gene_8062, gene_8063, gene_8064, gene_8397, gene_9331
Amaranthaceae	Atriplex hortensis	9	Ah004428, Ah009614, Ah010894, Ah010895, Ah015264, Ah034461 ... Ah034462, Ah034471, Ah036065
Amaranthaceae	Beta vulgaris	7	BVRB_2g034050, BVRB_4g083710, BVRB_5g107560, BVRB_5g107570 ... BVRB_5g107600, BVRB_9g213430, BVRB_9g221250
Amaranthaceae	Salicornia bigelovii	22	Sbi_jg11362, Sbi_jg11363, Sbi_jg12285, Sbi_jg20360 ... Sbi_jg23406, Sbi_jg23807, Sbi_jg24626, Sbi_jg24627, Sbi_jg24628, Sbi_jg27730, Sbi_jg39353, Sbi_jg39354, Sbi_jg39958, Sbi_jg39959, Sbi_jg46317, Sbi_jg47271, Sbi_jg55289, Sbi_jg55291, Sbi_jg7636, Sbi_jg7637, Sbi_jg8489, Sbi_jg8490
Amaranthaceae	Salicornia europaea	9	Seu_jg12383, Seu_jg14374, Seu_jg14375, Seu_jg14982 ... Seu_jg17182, Seu_jg20103, Seu_jg20104, Seu_jg20645, Seu_jg21539
Amaranthaceae	Suaeda aralocaspica	9	GOSA_00005329, GOSA_00005330, GOSA_00009054, GOSA_00010943 ... GOSA_00014134, GOSA_00014135, GOSA_00014691, GOSA_00018844, GOSA_00026938
Amaranthaceae	Suaeda glauca	22	Sgl04480, Sgl09532, Sgl12122, Sgl12123, Sgl17403, Sgl17405 ... Sgl33209, Sgl38449, Sgl42849, Sgl47609, Sgl47610, Sgl47634, Sgl47635, Sgl51195, Sgl51196, Sgl55517, Sgl55812, Sgl56497, Sgl60736, Sgl61021, Sgl63622, Sgl68115
Amaranthaceae	Chenopodium album	17	gene:ENSEOMG00000004584, gene:ENSEOMG00000008967 ... gene:ENSEOMG00000010783, gene:ENSEOMG00000016394, gene:ENSEOMG00000017029, gene:ENSEOMG00000019860, gene:ENSEOMG00000020705, gene:ENSEOMG00000021635, gene:ENSEOMG00000024285, gene:ENSEOMG00000033143, gene:ENSEOMG00000035376, gene:ENSEOMG00000035944, gene:ENSEOMG00000037456, gene:ENSEOMG00000039928, gene:ENSEOMG00000046993, gene:ENSEOMG00000050711, gene:ENSEOMG00000050969
Amaranthaceae	Chenopodium quinoa	13	CQ.Regalona.r1.1AG0022120, CQ.Regalona.r1.1BG0002260 ... CQ.Regalona.r1.2AG0013670, CQ.Regalona.r1.2BG0015760, CQ.Regalona.r1.2BG0015770, CQ.Regalona.r1.2BG0015790, CQ.Regalona.r1.5AG0001320, CQ.Regalona.r1.5BG0001450, CQ.Regalona.r1.7BG0002430, CQ.Regalona.r1.7BG0011690, CQ.Regalona.r1.8AG0015360, CQ.Regalona.r1.8BG0016600, CQ.Regalona.r1.9AG0022230
Anacardiaceae	Pistacia vera	9	pistato.v30048840, pistato.v30094210, pistato.v30111470 ... pistato.v30163060, pistato.v30245520, pistato.v30259860, pistato.v30261050, pistato.v30277560, pistato.v30277900
Apiaceae	Apium graveolens	12	Ag2G03032, Ag3G02553, Ag4G01805, Ag4G01852, Ag4G01854 ... Ag4G01855, Ag6G02384, Ag7G00410, Ag7G01153, Ag7G01154, Ag9G00845, Ag9G02582
Arecaceae	Cocos nucifera	6	COCNU_03G003860, COCNU_08G005770, COCNU_09G004850 ... COCNU_14G002580, scaffold002869G000020, scaffold020734G000010
Arecaceae	Phoenix dactylifera	7	gene-LOC103696457, gene-LOC103701149, gene-LOC103704960 ... gene-LOC103708329, gene-LOC103708726, gene-LOC120111692, gene-LOC120111694
Asparagaceae	Asparagus officinalis	10	AsparagusV1_04.2358.V1.1, AsparagusV1_06.1264.V1.1 ... AsparagusV1_06.1265.V1.1, AsparagusV1_06.1266.V1.1, AsparagusV1_06.446.V1.1, AsparagusV1_06.449.V1.1, AsparagusV1_06.450.V1.1, AsparagusV1_06.453.V1.1, AsparagusV1_06.454.V1.1, AsparagusV1_10.234.V1.1
Asteraceae	Flaveria trinervia	8	Ftri17G06300, Ftri17G14092, Ftri18G01080, Ftri4G11374 ... Ftri4G18706, Ftri8G01871, Ftri8G16435, Ftri9G19704
Brassicaceae	Arabidopsis thaliana	7	AT1G53470.1, AT1G78610.1, AT2G17000.1, AT2G17010.1 ... AT3G14810.1, AT5G12080.1, AT5G19520.1
Brassicaceae	Eutrema salsugineum	8	Thhalv10000065m.g.v1.0, Thhalv10012021m.g.v1.0 ... Thhalv10012772m.g.v1.0, Thhalv10015373m.g.v1.0, Thhalv10018110m.g.v1.0, Thhalv10020041m.g.v1.0, Thhalv10023104m.g.v1.0, Thhalv10023165m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp1g40010.v2.2, Sp3g13030.v2.2, Sp3g30290.v2.2 ... Sp3g30300.v2.2, Sp5g33700.v2.2, Sp6g24870.v2.2, Sp6g24880.v2.2, Sp6g31540.v2.2
Brassicaceae	Brassica nigra	15	BniB02g013150.2N, BniB02g043180.2N, BniB02g050010.2N ... BniB03g058170.2N, BniB03g064530.2N, BniB04g055890.2N, BniB05g025540.2N, BniB05g044210.2N, BniB07g002400.2N, BniB07g027870.2N, BniB08g005680.2N, BniB08g005690.2N, BniB08g005700.2N, BniB08g009930.2N, BniB08g032970.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq01G0090, Ceq03G0814, Ceq03G2133, Ceq06G0807, Ceq07G1774 ... Ceq07G1775, Ceq08G1517
Casuarinaceae	Casuarina glauca	8	Cgl01G0064, Cgl01G0066, Cgl03G0894, Cgl03G2277, Cgl06G0832 ... Cgl07G1921, Cgl07G1922, Cgl08G1549
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno14g05220
Dunaliellaceae	Dunaliella salina	1	Dusal.0085s00029.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g12650, gene.Thate05g02020, gene.Thate09g19650
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1074, nbisL1-mrna-1116
Nitrariaceae	Nitraria sibirica	10	evm.TU.LG03.1892, evm.TU.LG05.1338, evm.TU.LG05.1341 ... evm.TU.LG05.1346, evm.TU.LG05.1387, evm.TU.LG05.1388, evm.TU.LG07.1296, evm.TU.LG07.676, evm.TU.LG07.677, evm.TU.LG08.358
Plantaginaceae	Plantago ovata	8	Pov_00001724, Pov_00003794, Pov_00004058, Pov_00013407 ... Pov_00013792, Pov_00020602, Pov_00020605, Pov_00036962
Plumbaginaceae	Limonium bicolor	10	Lb0G37604, Lb2G12732, Lb2G12734, Lb3G16906, Lb3G16914 ... Lb3G17283, Lb3G17285, Lb3G17490, Lb3G18554, Lb4G25801
Poaceae	Echinochloa crus-galli	10	AH06.690, AH07.2937, AH09.1911, BH03.2533, BH06.762 ... BH07.2747, BH09.2080, CH06.791, CH07.2834, CH09.2224
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0140290, gene-QOZ80_2BG0195960 ... gene-QOZ80_4AG0307510, gene-QOZ80_4BG0338550, gene-QOZ80_6AG0512880, gene-QOZ80_6BG0464720
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0188170.1, HORVU.MOREX.r3.4HG0411730.1 ... HORVU.MOREX.r3.5HG0489700.1, HORVU.MOREX.r3.6HG0551840.1, HORVU.MOREX.r3.6HG0602620.1, HORVU.MOREX.r3.7HG0662830.1
Poaceae	Lolium multiflorum	11	gene-QYE76_006040, gene-QYE76_006128, gene-QYE76_007394 ... gene-QYE76_024247, gene-QYE76_024250, gene-QYE76_024251, gene-QYE76_024267, gene-QYE76_027397, gene-QYE76_027399, gene-QYE76_045490, gene-QYE76_071808
Poaceae	Oryza coarctata	6	Oco03G017680, Oco04G018460, Oco07G013010, Oco08G012590 ... Oco11G004730, Oco12G004780
Poaceae	Oryza sativa	3	LOC_Os02g44770.1, LOC_Os04g47320.1, LOC_Os06g10410.1
Poaceae	Paspalum vaginatum	4	gene-BS78_04G225500, gene-BS78_06G190000, gene-BS78_K072300 ... gene-BS78_10G079900
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0100898, Pt_Chr0100933, Pt_Chr0203671, Pt_Chr0203672 ... Pt_Chr0203673, Pt_Chr0301663, Pt_Chr0405044, Pt_Chr0405046, Pt_Chr0405055, Pt_Chr0701634
Poaceae	Sporobolus alterniflorus	8	Chr06G005470, Chr0G019940, Chr0G033810, Chr11G020650 ... Chr15G007080, Chr23G006630, Chr25G005540, Chr30G005350
Poaceae	Thinopyrum elongatum	10	Tel1E01G045200, Tel2E01G1036200, Tel2E01G697500 ... Tel4E01G558100, Tel4E01G558200, Tel4E01G558300, Tel5E01G017500, Tel5E01G411100, Tel6E01G471200, Tel7E01G325700
Poaceae	Triticum dicoccoides	13	gene_TRIDC1AG002200, gene_TRIDC2AG058720 ... gene_TRIDC2BG061730, gene_TRIDC4BG057250, gene_TRIDC4BG057260, gene_TRIDC5AG040150, gene_TRIDC5AG072770, gene_TRIDC5AG072780, gene_TRIDC5BG042540, gene_TRIDC6AG038920, gene_TRIDC6BG045760, gene_TRIDC7AG020590, gene_TRIDC7BG010570
Poaceae	Triticum aestivum	20	TraesCS1A02G021200.1, TraesCS1D02G020800.1 ... TraesCS2A02G407000.1, TraesCS2B02G424600.1, TraesCS2D02G403900.1, TraesCS4B02G340900.1, TraesCS4B02G341000.1, TraesCS4D02G336900.1, TraesCS4D02G337000.1, TraesCS5A02G256800.1, TraesCS5A02G510300.2, TraesCS5A02G510400.1, TraesCS5B02G256300.1, TraesCS5D02G265400.1, TraesCS6A02G252600.2, TraesCS6B02G272700.2, TraesCS6D02G234100.1, TraesCS7A02G166500.1, TraesCS7B02G070900.1, TraesCS7D02G167000.1
Poaceae	Zea mays	9	Zm00001eb032540_P001, Zm00001eb074090_P004 ... Zm00001eb182210_P001, Zm00001eb186970_P004, Zm00001eb201020_P001, Zm00001eb250070_P001, Zm00001eb278700_P001, Zm00001eb373650_P001, Zm00001eb429250_P001
Poaceae	Zoysia japonica	6	nbis-gene-22332, nbis-gene-4894, nbis-gene-5544 ... nbis-gene-5545, nbis-gene-55670, nbis-gene-56155
Poaceae	Zoysia macrostachya	4	Zma_g16840, Zma_g20230, Zma_g21785, Zma_g29302
Portulacaceae	Portulaca oleracea	28	evm.TU.LG01.234, evm.TU.LG03.557, evm.TU.LG04.1375 ... evm.TU.LG04.1877, evm.TU.LG04.1879, evm.TU.LG04.518, evm.TU.LG04.951, evm.TU.LG04.952, evm.TU.LG05.1898, evm.TU.LG06.1798, evm.TU.LG06.475, evm.TU.LG06.477, evm.TU.LG06.478, evm.TU.LG07.1606, evm.TU.LG07.822, evm.TU.LG07.823, evm.TU.LG07.824, evm.TU.LG10.1613, evm.TU.LG10.618, evm.TU.LG11.1151, evm.TU.LG12.1167, evm.TU.LG13.964, evm.TU.LG15.109, evm.TU.LG15.110, evm.TU.LG15.1654, evm.TU.LG17.630, evm.TU.LG21.624, evm.TU.LG24.445
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g08510, gene.Posoc06g10900, gene.Posoc08g04080 ... gene.Posoc08g05320
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_10_RagTag.552, evm.TU.Scaffold_10_RagTag.673 ... evm.TU.Scaffold_11_RagTag.629, evm.TU.Scaffold_18_RagTag.261, evm.TU.Scaffold_2_RagTag.57, evm.TU.Scaffold_5_RagTag.134
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-11101, nbisL1-mrna-11104, nbisL1-mrna-13820 ... nbisL1-mrna-25776, nbisL1-mrna-28276, nbisL1-mrna-28277, nbisL1-mrna-28278, nbisL1-mrna-28316, nbisL1-mrna-5148, nbisL1-mrna-6699
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10977, nbisL1-mrna-11209, nbisL1-mrna-12801 ... nbisL1-mrna-1753, nbisL1-mrna-8906
Rhizophoraceae	Ceriops zippeliana	8	nbisL1-mrna-10653, nbisL1-mrna-12263, nbisL1-mrna-12266 ... nbisL1-mrna-16946, nbisL1-mrna-8922, nbisL1-mrna-8923, nbisL1-mrna-9320, nbisL1-mrna-9321
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000006l.79, evm.TU.utg000009l.1202 ... evm.TU.utg000033l.390, evm.TU.utg000033l.476
Rhizophoraceae	Kandelia obovata	4	Maker00005166, Maker00013284, Maker00014568, Maker00014761
Rhizophoraceae	Rhizophora apiculata	10	nbisL1-mrna-1002, nbisL1-mrna-14103, nbisL1-mrna-15820 ... nbisL1-mrna-15821, nbisL1-mrna-21015, nbisL1-mrna-21017, nbisL1-mrna-21018, nbisL1-mrna-3912, nbisL1-mrna-3992, nbisL1-mrna-9102
Rhizophoraceae	Rhizophora mangle	9	nbisL1-mrna-14402, nbisL1-mrna-15324, nbisL1-mrna-20700 ... nbisL1-mrna-21185, nbisL1-mrna-23941, nbisL1-mrna-24041, nbisL1-mrna-24163, nbisL1-mrna-8042, nbisL1-mrna-8149
Salicaceae	Populus euphratica	14	populus_peu00752, populus_peu00753, populus_peu08665 ... populus_peu11863, populus_peu12593, populus_peu15424, populus_peu17702, populus_peu17712, populus_peu17897, populus_peu31181, populus_peu31182, populus_peu35407, populus_peu35408, populus_peu35409
Solanaceae	Lycium barbarum	12	gene-LOC132604166, gene-LOC132606167, gene-LOC132606663 ... gene-LOC132608896, gene-LOC132608985, gene-LOC132628162, gene-LOC132635411, gene-LOC132635412, gene-LOC132635414, gene-LOC132635415, gene-LOC132635416, gene-LOC132635966
Solanaceae	Solanum chilense	4	SOLCI001015000, SOLCI003460500, SOLCI003721100 ... SOLCI004909200
Solanaceae	Solanum pennellii	5	gene-LOC107005528, gene-LOC107006192, gene-LOC107018020 ... gene-LOC107028926, gene-LOC107032282
Tamaricaceae	Reaumuria soongarica	13	MSTRG.12501_chr07_+, STRG.15240_chr06_-, STRG.32756_chr09_+ ... STRG.7606_chr05_+, gene_12299, gene_14830, gene_14831, gene_14832, gene_15258, gene_16726, gene_18150, gene_1859, gene_7949
Tamaricaceae	Tamarix chinensis	15	TC01G4653, TC02G0265, TC02G0267, TC02G0270, TC04G2503 ... TC05G0309, TC05G0702, TC05G0703, TC08G1653, TC08G1657, TC08G1662, TC09G1020, TC10G0183, TC10G1834, TC11G1357
Zosteraceae	Zostera marina	5	Zosma01g27690.v3.1, Zosma02g10540.v3.1, Zosma03g35450.v3.1 ... Zosma06g01860.v3.1, Zosma06g17880.v3.1