halophFGD

Basic Information

Locus ID: Sbi_jg54933

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: Zinc finger BED domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000006l	120198944	120200094	-	Sbi_jg54933

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.46	30,268.45 Da	38.62	80.12	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF53098	Ribonuclease H-like	113	254	9.86E-20	IPR012337

Best hit

Source	Best Hit ID	Description
RefSeq	XP_019104921.2	uncharacterized protein LOC104893683 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q80WQ9	Zinc finger BED domain-containing protein 4 OS=Mus musculus OX=10090 GN=Zbed4 PE=2 SV=1
TrEMBL	A0A803MF79	BED-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	4	gene_18523, gene_18908, gene_24739, gene_757
Amaranthaceae	Atriplex hortensis	4	Ah002403, Ah025340, Ah025341, Ah035896
Amaranthaceae	Beta vulgaris	2	BVRB_6g136250, BVRB_7g170450
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg16564, Sbi_jg23483, Sbi_jg33887, Sbi_jg40651 ... Sbi_jg44127, Sbi_jg54724, Sbi_jg54933
Amaranthaceae	Salicornia europaea	2	Seu_jg14931, Seu_jg27982
Amaranthaceae	Suaeda glauca	8	Sgl18348, Sgl25401, Sgl30582, Sgl30712, Sgl32903, Sgl38164 ... Sgl71565, Sgl75141
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000006175, gene:ENSEOMG00000019503
Amaranthaceae	Chenopodium quinoa	30	CQ.Regalona.r1.1AG0015170, CQ.Regalona.r1.1BG0000790 ... CQ.Regalona.r1.1BG0010630, CQ.Regalona.r1.2BG0017680, CQ.Regalona.r1.3BG0012350, CQ.Regalona.r1.3BG0025260, CQ.Regalona.r1.4AG0002990, CQ.Regalona.r1.4AG0017510, CQ.Regalona.r1.4BG0009700, CQ.Regalona.r1.5BG0003840, CQ.Regalona.r1.5BG0007100, CQ.Regalona.r1.5BG0009510, CQ.Regalona.r1.5BG0021230, CQ.Regalona.r1.6AG0002420, CQ.Regalona.r1.6AG0013410, CQ.Regalona.r1.6BG0009300, CQ.Regalona.r1.6BG0012470, CQ.Regalona.r1.7AG0015360, CQ.Regalona.r1.7AG0022350, CQ.Regalona.r1.7BG0004970, CQ.Regalona.r1.7BG0014980, CQ.Regalona.r1.7BG0016010, CQ.Regalona.r1.7BG0022020, CQ.Regalona.r1.8AG0009920, CQ.Regalona.r1.8AG0016460, CQ.Regalona.r1.8AG0016530, CQ.Regalona.r1.8BG0005720, CQ.Regalona.r1.8BG0024410, CQ.Regalona.r1.9BG0012560, CQ.Regalona.r1.9BG0013640
Plantaginaceae	Plantago ovata	1	Pov_00009065
Plumbaginaceae	Limonium bicolor	1	Lb3G16891
Zosteraceae	Zostera marina	2	Zosma04g10920.v3.1, Zosma04g21000.v3.1