Basic Information
Locus ID:
Sbi_jg54157
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ABC transporter A family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 81920612 | 81922516 | - | Sbi_jg54157 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 15,189.77 Da | 61.23 | 93.69 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 20 | 77 | 3.0E-6 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 10 | 112 | 3.7E-11 | IPR027417 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41700.2 | ATP-binding cassette A1. | 0 |
| RefSeq | XP_048497584.1 | ABC transporter A family member 1 isoform X5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84M24 | ABC transporter A family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCA1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A438JKZ9 | ABC transporter A family member 1 OS=Vitis vinifera OX=29760 GN=ABCA1_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 19 | Sbi_jg1240, Sbi_jg13942, Sbi_jg14483, Sbi_jg19568 ... |