halophFGD

Basic Information

Locus ID: Sbi_jg54070

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: DNA RNA polymerases superfamily protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000006l	75043658	75044659	-	Sbi_jg54070

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.36	14,290.72 Da	47.44	84.84	-0.70

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF53098	Ribonuclease H-like	15	62	5.16E-10	IPR012337
Gene3D	G3DSA:3.30.420.10	-	8	74	2.6E-10	IPR036397
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	1	86	8.504608	IPR001584

Gene Ontology

Biological Process:

GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_027096072.1	uncharacterized protein LOC113715966 [Coffea arabica]	0
TrEMBL	A0A438ELF8	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4218 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg32691, Sbi_jg54070, Sbi_jg60491
Brassicaceae	Schrenkiella parvula	1	Sp1g28950.v2.2