Basic Information
Locus ID:
Sbi_jg53763
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Cytosine specific DNA methyltransferase replication foci domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 48231526 | 48233643 | + | Sbi_jg53763 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 32,710.33 Da | 47.61 | 77.31 | -0.40 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55390.1 | ENHANCED DOWNY MILDEW 2. Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression. | 0 |
| RefSeq | XP_048496115.1 | protein ENHANCED DOWNY MILDEW 2 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| F4K3G5 | Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana OX=3702 GN=EDM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RYK5 | DNMT1-RFD domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_014710 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19095 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12177, gene_12178 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038395 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g089620 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg53763 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000041404 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.470.V1.1, AsparagusV1_08.1530.V1.1 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.470, AH05.471, AH05.472, BH05.526, BH05.527, CH05.591 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0243650, gene-QOZ80_3BG0284580 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0463130.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047976 |
| Poaceae | Oryza coarctata | 4 | Oco05G009120, Oco06G009470, Oco23G003830, Oco24G003380 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g15990.1, LOC_Os12g12300.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_08G063700, gene-BS78_08G064000 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102236, Pt_Chr0701172, Pt_Chr0701311 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G008210, Chr06G026230, Chr06G026240, Chr07G003440 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G249400 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG012540, gene_TRIDC4BG037750 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS4A02G092300.1, TraesCS4B02G212000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb117400_P004, Zm00001eb133860_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2027, nbis-gene-25397 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24894 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.882 |