Basic Information
Locus ID:
Sbi_jg53118
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 21740858 | 21742216 | + | Sbi_jg53118 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 31,049.20 Da | 46.23 | 89.52 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 1 | 37 | 3.7E-7 | IPR001810 |
| Pfam | PF07734 | F-box associated | 86 | 171 | 2.1E-7 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 67 | 5.89E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 54 | 2.4E-9 | - |
| SMART | SM00256 | fbox_2 | 4 | 45 | 4.8E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 44 | 10.318796 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026024 |
| Amaranthaceae | Salicornia bigelovii | 32 | Sbi_jg12102, Sbi_jg12547, Sbi_jg12774, Sbi_jg12776 ... |
| Amaranthaceae | Salicornia europaea | 24 | Seu_jg10045, Seu_jg10048, Seu_jg10051, Seu_jg10052 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018958 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl34095 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0016320 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1767, evm.TU.LG20.131 |