Basic Information
Locus ID:
Sbi_jg53100
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 21404876 | 21412541 | + | Sbi_jg53100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 48,831.70 Da | 44.49 | 114.82 | 0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 24 | 419 | 4.25868E-58 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 60 | 380 | 2.3E-25 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 60 | 434 | 4.97E-41 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 31 | 422 | 3.7E-38 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 18 | 426 | 11.930461 | IPR020846 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 304 | 325 | 4.0E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 58 | 77 | 4.0E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 364 | 387 | 4.0E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 89 | 113 | 4.0E-6 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_010681370.2 | hippocampus abundant transcript-like protein 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5SR56 | Hippocampus abundant transcript-like protein 1 OS=Homo sapiens OX=9606 GN=MFSD14B PE=1 SV=3 | 0 | |
| TrEMBL | A0A803KV97 | MFS domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology