Basic Information
Locus ID:
Sbi_jg53008
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
elongator complex protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 19918361 | 19929445 | - | Sbi_jg53008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 92,846.73 Da | 39.29 | 89.45 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 117 | 151 | 0.0028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 687 | 718 | 6.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 261 | 0.0038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 346 | 0.07 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 406 | 441 | 0.0026 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 194 | 725 | 8.61E-42 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 25 | 347 | 1.28E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 576 | 677 | 3.2E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 287 | 406 | 7.3E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 407 | 517 | 1.8E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 678 | 838 | 1.9E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 158 | 280 | 1.1E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 155 | 1.3E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 403 | 442 | 5.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 724 | 768 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 52 | 102 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 622 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 785 | 833 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 261 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 346 | 0.0039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 453 | 494 | 98.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 109 | 152 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 630 | 669 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 679 | 718 | 1.3E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 686 | 721 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 127 | 153 | 9.171722 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 686 | 727 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 637 | 678 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 410 | 442 | 9.572741 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 248 | 262 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 139 | 153 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 705 | 719 | 1.2E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49540.1 | elongator protein 2. | 0 |
| RefSeq | XP_021850226.1 | elongator complex protein 2 [Spinacia oleracea] | 0 |
| F4I1S7 | Elongator complex protein 2 OS=Arabidopsis thaliana OX=3702 GN=ELP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QTB1 | Elongator complex protein 2 OS=Spinacia oleracea OX=3562 GN=SOVF_143980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5217, jg5231 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4074 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah025578, Ah026006, Ah026010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12863, Sbi_jg53008 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8851 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027768 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33131, Sgl38383 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001994, gene:ENSEOMG00000002926 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013230, CQ.Regalona.r1.6BG0014380 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30215110, pistato.v30215540 |
| Apiaceae | Apium graveolens | 1 | Ag6G00526 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G002220 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706798 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1112.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G15124 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G49540.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g36390.v2.2, Sp1g36410.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g061070.2N, BniB07g006270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2050 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2242 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g01560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0657s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00800 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1495 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019163, Pov_00040828 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05770, Lb5G27517 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1919, BH08.2010, CH08.2194 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0635580, gene-QOZ80_8BG0664380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0021770.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_018631 |
| Poaceae | Oryza coarctata | 1 | Oco15G011920 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g38570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G175600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403312 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G000360, Chr29G003100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G184600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG015670, gene_TRIDC1BG016900 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G104700.1, TraesCS1B02G116100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb033820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47610 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23184 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1898, evm.TU.LG14.188 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g02540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.126 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15623, nbisL1-mrna-2951 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17460 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.75 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004689 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11647 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2808 |
| Salicaceae | Populus euphratica | 3 | populus_peu07105, populus_peu21078, populus_peu21079 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605667, gene-LOC132606061 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022021 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16745_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1425 |
| Zosteraceae | Zostera marina | 1 | Zosma01g11250.v3.1 |