Basic Information
Locus ID:
Sbi_jg52856
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
CMT1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 17167282 | 17176295 | - | Sbi_jg52856 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 87,908.26 Da | 40.88 | 79.33 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 330 | 380 | 4.35333E-25 | - |
| Pfam | PF01426 | BAH domain | 77 | 174 | 3.6E-12 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 390 | 749 | 4.3E-32 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 331 | 382 | 2.8E-10 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 233 | 750 | 5.69E-76 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 327 | 382 | 1.28E-13 | IPR016197 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 544 | 717 | 8.8E-237 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 9 | 173 | 2.4E-43 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 236 | 768 | 8.8E-237 | - |
| SMART | SM00298 | chromo_7 | 330 | 384 | 3.7E-6 | IPR000953 |
| SMART | SM00439 | BAH_4 | 71 | 184 | 1.8E-11 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 234 | 758 | 42.643242 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 71 | 184 | 18.381496 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 331 | 379 | 12.159301 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 349 | 369 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 485 | 498 | 3.9E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 439 | 453 | 3.9E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 235 | 251 | 3.9E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 231 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010666617.2 | putative DNA (cytosine-5)-methyltransferase CMT1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B4R8 | DNA (cytosine-5-)-methyltransferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_003270 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology