Basic Information
Locus ID:
Sbi_jg52837
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 16554419 | 16561584 | + | Sbi_jg52837 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.12 | 18,804.73 Da | 50.76 | 81.30 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 118 | 162 | 9.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 164 | 8.84E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 165 | 7.9E-17 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 119 | 162 | 10.659906 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42940.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010667417.2 | uncharacterized protein LOC104884466 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FMM4 | Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8B2Q8 | RING-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_008620 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_16691, gene_18522, gene_19539, gene_19766, gene_9814 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg52837 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9037 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717452 |
| Solanaceae | Solanum chilense | 1 | SOLCI004904300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007023 |