Basic Information
Locus ID:
Sbi_jg52835
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 16509390 | 16512206 | - | Sbi_jg52835 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 26,334.63 Da | 50.41 | 102.78 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 21 | 54 | 4.4E-8 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 65 | 208 | 3.14E-20 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 56 | 8.24E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 63 | 2.4E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 87 | 226 | 4.6E-23 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 116 | 141 | 2.1 | IPR006553 |
| SMART | SM00256 | fbox_2 | 24 | 65 | 0.002 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 142 | 166 | 2.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 167 | 192 | 0.015 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 85 | 113 | 180.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67140.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021751925.1 | F-box protein At5g67140-like [Chenopodium quinoa] | 0 |
| Q9FH99 | F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KSA2 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17417, jg30669 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23948 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027432 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13042, Sbi_jg52835 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9040 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010209 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33922, Sgl39289, Sgl39307 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000001061, gene:ENSEOMG00000025584 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025190, CQ.Regalona.r1.6BG0012600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30206150 |
| Apiaceae | Apium graveolens | 1 | Ag4G01101 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G005070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713765 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1456.V1.1, AsparagusV1_08.2670.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G26003 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004869m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29550.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g014850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1331 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1336 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g11610 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g03470 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6639 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2111 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023902 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06293 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.369, BH06.487, CH06.488 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0510030, gene-QOZ80_6BG0462160 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0655850.2, HORVU.MOREX.r3.7HG0655860.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028419 |
| Poaceae | Oryza coarctata | 2 | Oco11G003110, Oco12G003080 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g07000.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G054900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402072, Pt_Chr0402108 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G022130, Chr14G002350, Chr21G001460 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G261800, Tel7E01G261900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG008370, gene_TRIDC7AG014920 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G127700.2, TraesCS7A02G127800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb375600_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34797, nbis-gene-5097 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29162, Zma_g31412 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2735, evm.TU.LG23.941 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g03900 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.362 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-619, nbisL1-mrna-705 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11866 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6086 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1023 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012828 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6425 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2219 |
| Salicaceae | Populus euphratica | 1 | populus_peu14403 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621566 |
| Solanaceae | Solanum chilense | 1 | SOLCI000735300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011376 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_3197, gene_3417 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1753, TC11G0259 |
| Zosteraceae | Zostera marina | 1 | Zosma06g25860.v3.1 |