Basic Information
Locus ID:
Sbi_jg52829
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
OTU domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 16420003 | 16432204 | - | Sbi_jg52829 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 41,185.16 Da | 36.61 | 69.32 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14279 | CUE | 220 | 242 | 0.00195147 | - |
| Pfam | PF02810 | SEC-C motif | 300 | 318 | 4.1E-6 | IPR004027 |
| Pfam | PF02338 | OTU-like cysteine protease | 45 | 135 | 4.9E-14 | IPR003323 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 23 | 163 | 3.53E-38 | IPR038765 |
| SUPERFAMILY | SSF103642 | Sec-C motif | 298 | 318 | 3.76E-5 | - |
| Gene3D | G3DSA:3.90.70.80 | - | 24 | 162 | 2.6E-50 | - |
| Gene3D | G3DSA:3.10.450.50 | - | 217 | 319 | 3.0E-9 | - |
| ProSiteProfiles | PS50802 | OTU domain profile. | 38 | 162 | 20.514547 | IPR003323 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 283 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67170.1 | SEC-C motif-containing protein / OTU-like cysteine protease family protein. | 0 |
| RefSeq | XP_021714340.1 | OTU domain-containing protein 3-like isoform X2 [Chenopodium quinoa] | 0 |
| F4K3M6 | OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 OS=Arabidopsis thaliana OX=3702 GN=OTU7 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QX02 | OTU domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_137140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40012 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23951 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027425 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13047, Sbi_jg52829 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9044 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010204 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33916, Sgl39283, Sgl39302 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000001662, gene:ENSEOMG00000027069 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025260, CQ.Regalona.r1.6BG0026780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205880 |
| Apiaceae | Apium graveolens | 1 | Ag4G01106 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G007750 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706509 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.825.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G28782 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67170.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004429m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29500.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g043780.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2140, Ceq05G1337 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl04G1909, Cgl05G1345, Cgl06G2110 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05340 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0330s00005.v1.0, Dusal.0760s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g28930 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2106 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00020261, Pov_00023892, Pov_00023896, Pov_00023898 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36108 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2660, BH09.2887, CH09.3103 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299960, gene-QOZ80_4BG0330720 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0212580.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047268 |
| Poaceae | Oryza coarctata | 1 | Oco07G018810 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g57480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G277900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300250, Pt_Chr0300292 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G001340, Chr26G017940 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G930000, Tel7E01G674200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG076230, gene_TRIDC2BG083410 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G545500.2, TraesCS2B02G576000.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb066800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23161 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20660 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1031, evm.TU.LG05.1584 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.367 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-623, nbisL1-mrna-709 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17757 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6090 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1020 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012886 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6422 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2215 |
| Salicaceae | Populus euphratica | 1 | populus_peu14411 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620443 |
| Solanaceae | Solanum chilense | 1 | SOLCI005502100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015171 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3416 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0262 |
| Zosteraceae | Zostera marina | 1 | Zosma01g18400.v3.1 |