Basic Information
Locus ID:
Sbi_jg52823
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 16078457 | 16152142 | - | Sbi_jg52823 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 462,887.81 Da | 41.87 | 87.72 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2635 | 2739 | 3.11395E-4 | - |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 136 | 380 | 7.3E-66 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 575 | 800 | 1.2E-31 | IPR031642 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3143 | 3434 | 1.2E-13 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 2.1E-31 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1989 | 2156 | 1.8E-11 | IPR009291 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3685 | 3788 | 6.3E-8 | IPR031645 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2238 | 2371 | 1.8E-9 | IPR009291 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1848 | 1867 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3501 | 3521 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_010679514.1 | uncharacterized protein LOC104894866 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q07878 | Intermembrane lipid transfer protein VPS13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KY05 | C2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology