Basic Information
Locus ID:
Sbi_jg52770
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Microtubule-associated protein RP EB family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 15293526 | 15295872 | + | Sbi_jg52770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 36,088.46 Da | 54.61 | 84.63 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00307 | Calponin homology (CH) domain | 16 | 113 | 5.0E-10 | IPR001715 |
| Pfam | PF03271 | EB1-like C-terminal motif | 210 | 248 | 7.4E-18 | IPR004953 |
| SUPERFAMILY | SSF140612 | EB1 dimerisation domain-like | 195 | 252 | 1.96E-18 | IPR036133 |
| SUPERFAMILY | SSF47576 | Calponin-homology domain, CH-domain | 3 | 131 | 6.02E-42 | IPR036872 |
| Gene3D | G3DSA:1.20.5.1430 | - | 194 | 267 | 1.9E-22 | - |
| Gene3D | G3DSA:1.10.418.10 | - | 6 | 133 | 3.1E-52 | IPR036872 |
| ProSiteProfiles | PS51230 | EB1-C terminal (EB1-C) domain profile. | 185 | 255 | 14.636963 | IPR004953 |
| ProSiteProfiles | PS50021 | Calponin homology (CH) domain profile. | 13 | 115 | 16.603905 | IPR001715 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 326 | - | - |
| Coils | Coil | Coil | 193 | 213 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67270.1 | end binding protein 1C. encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis. | 0 |
| RefSeq | XP_010679542.1 | microtubule-associated protein RP/EB family member 1C [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FGQ6 | Microtubule-associated protein RP/EB family member 1C OS=Arabidopsis thaliana OX=3702 GN=EB1C PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KY25 | Microtubule-associated protein RP/EB family member 1C OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17398, jg18617, jg39995 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_13865, gene_16709, gene_19615 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000921, Ah036893 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g015560, BVRB_6g127450 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg13085, Sbi_jg31161, Sbi_jg31162, Sbi_jg39476 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg14859, Seu_jg25727, Seu_jg9079 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00004599, GOSA_00010175, GOSA_00019618 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl12914, Sgl33880, Sgl39252 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000000342, gene:ENSEOMG00000005345 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0017760, CQ.Regalona.r1.5AG0021020 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30137360 |
| Apiaceae | Apium graveolens | 2 | Ag5G00301, Ag5G00604 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G006950, scaffold016872G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719185, gene-LOC103720225 |
| Asparagaceae | Asparagus officinalis | 8 | AsparagusV1_01.1578.V1.1, AsparagusV1_01.927.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G30079, Ftri17G09740, Ftri6G21784 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G47690.1, AT5G62500.1, AT5G67270.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004586m.g.v1.0, Thhalv10004754m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g25680.v2.2, Sp2g29390.v2.2, Sp5g14240.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB04g002220.2N, BniB06g010780.2N, BniB07g043740.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1789, Ceq05G1358 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1967, Cgl05G1363 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g05300, gene.Cymno10g01670 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0059s00027.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate03g09850, gene.Thate04g05620, gene.Thate09g00990 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7111 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2083, evm.TU.LG10.923 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00018963, Pov_00029168 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G26686, Lb7G34433 |
| Poaceae | Echinochloa crus-galli | 8 | AH01.1696, AH02.2052, AH09.2470, BH01.1895, BH09.2691 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0112520, gene-QOZ80_2BG0165900 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0047290.1, HORVU.MOREX.r3.2HG0205940.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_010516, gene-QYE76_011854, gene-QYE76_046646 ... |
| Poaceae | Oryza coarctata | 4 | Oco07G017200, Oco08G016590, Oco19G007180, Oco20G007140 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g54940.1, LOC_Os10g35580.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G187100, gene-BS78_06G254300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300823, Pt_Chr0502808 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G030180, Chr09G001980, Chr15G021480, Chr23G002710 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G307500, Tel2E01G067900, Tel2E01G887200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG025910, gene_TRIDC1BG031100 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS1A02G170100.1, TraesCS1B02G186800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb044540_P001, Zm00001eb068860_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-22981, nbis-gene-43970, nbis-gene-45327 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g12693, Zma_g15209, Zma_g20536 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.822, evm.TU.LG03.687, evm.TU.LG09.1997 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g13840, gene.Posoc06g04280 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60424.2, evm.TU.Scaffold_11_RagTag.909 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14586, nbisL1-mrna-17302 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-14728, nbisL1-mrna-15141, nbisL1-mrna-20331 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11936, nbisL1-mrna-12485 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000010l.39, evm.TU.utg000011l.1122 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00007394, Maker00008584, Maker00012857 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15479, nbisL1-mrna-6407, nbisL1-mrna-824 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-2195, nbisL1-mrna-3252, nbisL1-mrna-8551 |
| Salicaceae | Populus euphratica | 5 | populus_peu14427, populus_peu23351, populus_peu28511 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623879, gene-LOC132632969 |
| Solanaceae | Solanum chilense | 1 | SOLCI004061400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009156, gene-LOC107012864 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.14826_chr08_+, STRG.30989_chr11_- |
| Tamaricaceae | Tamarix chinensis | 3 | TC04G1802, TC04G2585, TC05G1107 |
| Zosteraceae | Zostera marina | 2 | Zosma03g33480.v3.1, Zosma05g24130.v3.1 |