Basic Information
Locus ID:
Sbi_jg52704
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Replication factor A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 14156201 | 14158270 | - | Sbi_jg52704 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 36,410.47 Da | 32.31 | 76.54 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04481 | RPA1_DBD_B_like | 45 | 142 | 9.66481E-10 | - |
| Pfam | PF16900 | Replication protein A OB domain | 41 | 130 | 2.3E-6 | IPR031657 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 41 | 144 | 6.57E-15 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 172 | 255 | 1.88E-8 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 21 | 154 | 2.3E-21 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 157 | 258 | 3.6E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 321 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021859321.1 | replication protein A 70 kDa DNA-binding subunit B-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A8J4QF91 | Rep_fac-A_C domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_024594 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology