Basic Information
Locus ID:
Sbi_jg52099
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 4564767 | 4577039 | + | Sbi_jg52099 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 47,676.96 Da | 52.17 | 75.09 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.31957E-27 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 74 | 5.1E-17 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 323 | 378 | 8.7E-21 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 404 | 439 | 8.3E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 237 | 272 | 3.9E-10 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 231 | 282 | 8.13E-10 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 319 | 385 | 1.7E-20 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 5.41E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 384 | 445 | 3.48E-14 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 317 | 379 | 3.8E-24 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 396 | 443 | 7.0E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 229 | 277 | 2.3E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 5.7E-25 | - |
| SMART | SM00165 | uba_6 | 404 | 441 | 5.5E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 234 | 274 | 0.015 | IPR015940 |
| SMART | SM00727 | CBM | 321 | 364 | 4.6E-7 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.3E-19 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 151 | 445 | 6.9E-73 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 401 | 442 | 14.354177 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.671614 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 232 | 275 | 11.366136 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 430 | 445 | 1.6E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 415 | 429 | 1.6E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 398 | 414 | 1.6E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 349 | 371 | 1.6E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 306 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021754095.1 | ubiquitin receptor RAD23c-like isoform X3 [Chenopodium quinoa] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A314LE94 | Ubiquitin receptor RAD23 OS=Nicotiana attenuata OX=49451 GN=RAD23D PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology