Basic Information
Locus ID:
Sbi_jg51947
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 1950940 | 1953002 | + | Sbi_jg51947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 53,063.82 Da | 41.80 | 112.18 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 386 | 427 | 4.3E-9 | IPR006566 |
| Pfam | PF00646 | F-box domain | 43 | 79 | 1.9E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 39 | 94 | 8.24E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 160 | 435 | 1.65E-10 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 36 | 80 | 1.6E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 173 | 464 | 1.1E-10 | IPR032675 |
| SMART | SM00579 | 9598neu4hmm | 389 | 459 | 2.7E-6 | IPR006566 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 29 | 5.0 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69630.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021743827.1 | putative F-box/FBD/LRR-repeat protein At1g78840 [Chenopodium quinoa] | 0 |
| Q9FWZ1 | F-box/LRR-repeat protein 13 OS=Arabidopsis thaliana OX=3702 GN=FBL13 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LKC1 | FBD domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah023533 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg51947 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6824, Seu_jg9920 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11645, Sgl17142 |