Basic Information
Locus ID:
Sbi_jg51629
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 10732816 | 10736842 | + | Sbi_jg51629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 69,984.38 Da | 36.29 | 104.47 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 260 | 302 | 9.10876E-29 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 424 | 463 | 1.0E-4 | IPR000225 |
| Pfam | PF04564 | U-box domain | 256 | 326 | 2.8E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 383 | 422 | 2.1E-10 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 331 | 5.81E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 353 | 627 | 1.55E-44 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 253 | 329 | 7.4E-31 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 10 | 130 | 2.9E-11 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 344 | 428 | 2.3E-14 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 429 | 530 | 1.1E-20 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 531 | 633 | 3.3E-13 | IPR011989 |
| SMART | SM00185 | arm_5 | 506 | 546 | 270.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 259 | 322 | 3.2E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 383 | 423 | 3.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 424 | 464 | 0.0052 | IPR000225 |
| SMART | SM00185 | arm_5 | 465 | 505 | 59.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 547 | 587 | 42.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 435 | 477 | 8.837399 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 394 | 436 | 13.6324 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 255 | 329 | 44.575249 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_021857695.1 | U-box domain-containing protein 14 [Spinacia oleracea] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QVY3 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_135140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology