Basic Information
Locus ID:
Sbi_jg51213
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Transcriptional regulator STERILE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000012l | 25656857 | 25672613 | + | Sbi_jg51213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 57,888.63 Da | 55.20 | 82.11 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 203 | 518 | 1.69E-13 | IPR036322 |
| SUPERFAMILY | SSF81383 | F-box domain | 116 | 166 | 2.83E-7 | IPR036047 |
| Gene3D | G3DSA:2.130.10.10 | - | 146 | 521 | 8.0E-13 | IPR015943 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 501 | 521 | 8.703868 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 505 | 519 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 78 | - | - |
| Coils | Coil | Coil | 52 | 72 | - | - |
| Coils | Coil | Coil | 378 | 398 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35770.1 | Transducin/WD40 repeat-like superfamily protein. A recessive mutation in the Arabidopsis STERILE APETALA (SAP) causes severe aberrations in inflorescence and flower and ovule development. | 0 |
| RefSeq | XP_010689285.2 | transcriptional regulator STERILE APETALA [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FKH1 | Transcriptional regulator STERILE APETALA OS=Arabidopsis thaliana OX=3702 GN=SAP PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8BLF1 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_9g206260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg33081, jg3991 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20726 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah038102, Ah038103, Ah038104 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g206260 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51213, Sbi_jg60495 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24479 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015772 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78350, Sgl80845 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000051632 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0003250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30017170 |
| Apiaceae | Apium graveolens | 1 | Ag2G00098 |
| Arecaceae | Cocos nucifera | 1 | scaffold000814G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698116 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G16936 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G35770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005699m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g06350.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g031670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2274 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2365 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g11250 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20580 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9809 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2245 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015588 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31620, Lb6G31635 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2232, evm.TU.LG23.462 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g05770 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1623 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12126 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1259 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10894 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.932 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10462 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15557 |
| Salicaceae | Populus euphratica | 1 | populus_peu26895 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618703, gene-LOC132642532 |
| Solanaceae | Solanum chilense | 1 | SOLCI002869500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107019635, gene-LOC107025733 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0157 |
| Zosteraceae | Zostera marina | 1 | Zosma06g22020.v3.1 |