Basic Information
Locus ID:
Sbi_jg51018
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
DNA RNA polymerases superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000012l | 12035650 | 12043270 | + | Sbi_jg51018 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 148,678.05 Da | 45.32 | 76.99 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 1110 | 1245 | 1.46692E-55 | - |
| CDD | cd00303 | retropepsin_like | 890 | 979 | 8.58723E-17 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 716 | 776 | 2.9E-5 | IPR005162 |
| Pfam | PF08284 | Retroviral aspartyl protease | 869 | 996 | 1.5E-29 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1275 | 1322 | 9.1E-11 | IPR041577 |
| SUPERFAMILY | SSF50630 | Acid proteases | 886 | 985 | 1.24E-6 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1050 | 1322 | 9.78E-84 | IPR043502 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 815 | 857 | 6.7E-5 | IPR036875 |
| Gene3D | G3DSA:3.30.70.270 | - | 1204 | 1249 | 5.8E-11 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 872 | 1004 | 1.5E-17 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 1151 | 1178 | 1.9E-51 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1072 | 1203 | 1.9E-51 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 796 | 862 | 1.3E-5 | - |
| SMART | SM00343 | c2hcfinal6 | 819 | 835 | 54.0 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 839 | 855 | 0.01 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 840 | 855 | 8.993406 | IPR001878 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 900 | 911 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 72 | - | - |
| Coils | Coil | Coil | 417 | 444 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048502918.1 | uncharacterized protein LOC104896594 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7LHG5 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2 | 0 | |
| TrEMBL | A0A438GHY0 | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Vitis vinifera OX=29760 GN=pol_2317 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 103 | Sbi_jg1018, Sbi_jg1323, Sbi_jg14120, Sbi_jg14340, Sbi_jg3658 ... |