Basic Information
Locus ID:
Sbi_jg50847
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Ubiquitin-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000012l | 2194150 | 2197138 | + | Sbi_jg50847 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 9,307.90 Da | 24.57 | 122.59 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 36 | 2.19E-8 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 40 | 6.0E-10 | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42300.1 | ubiquitin-like protein 5. | 0 |
| RefSeq | XP_020259735.1 | ubiquitin-like protein 5 [Asparagus officinalis] | 0 |
| Q9FGZ9 | Ubiquitin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=UBL5 PE=3 SV=1 | 0 | |
| TrEMBL | A0A392NFR4 | Ubiquitin-like protein 5 OS=Trifolium medium OX=97028 GN=A2U01_0019655 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8254 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_25680, gene_4258 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009096, Ah037843 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g133450, BVRB_9g207790 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31322, Sbi_jg50847 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24247 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020118 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl10400, Sgl15679, Sgl78518 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2BG0000680, CQ.Regalona.r1.9AG0004580 ... |
| Apiaceae | Apium graveolens | 2 | Ag10G00600, Ag2G00705 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G000130, COCNU_10G000310, COCNU_10G000320 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703961, gene-LOC103708417 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.31.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G09764, Ftri6G21264, FtriNA05225 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G45180.1, AT5G42300.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002757m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g08300.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g060540.2N, BniB07g049300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1702 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1740 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g08430, gene.Cymno11g02170 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0225s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g22660 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014616, Pov_00015993 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.257, BH04.246, BH05.195, BH07.2504, CH04.265, CH05.250 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0138080, gene-QOZ80_2BG0193760 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0355880.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023811, gene-QYE76_065301 |
| Poaceae | Oryza coarctata | 5 | Oco03G015900, Oco04G016520, Oco21G000870, Oco22G001710 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g41820.1, LOC_Os11g04880.1, LOC_Os12g04924.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G043600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703104, Pt_Chr0703142 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G009220, Chr17G008230 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG029660, gene_TRIDC4BG020740 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G185200.1.cds1, TraesCS4B02G133400.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25688, nbis-gene-27035 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18401, Zma_g24713 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.393, evm.TU.LG21.95 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g18820, gene.Posoc04g03800 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-26124, nbisL1-mrna-5261, nbisL1-mrna-5357 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4738 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4435, nbisL1-mrna-9988 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.349 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9554 |
| Salicaceae | Populus euphratica | 4 | populus_peu06270, populus_peu08366, populus_peu20104 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644749 |
| Solanaceae | Solanum chilense | 1 | SOLCI002047400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032293 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_18095, gene_9138 |
| Zosteraceae | Zostera marina | 2 | Zosma03g01680.v3.1, Zosma06g20630.v3.1 |