Basic Information
Locus ID:
Sbi_jg50692
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000026l | 25363922 | 25386876 | + | Sbi_jg50692 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 103,776.93 Da | 43.33 | 89.15 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 739 | 912 | 1.28071E-57 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 314 | 911 | 3.6E-85 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 35 | 140 | 7.8E-22 | IPR006615 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 312 | 913 | 1.96E-104 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 13 | 140 | 7.06E-26 | IPR035927 |
| Gene3D | G3DSA:3.10.20.90 | - | 153 | 237 | 1.7E-10 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 4 | 152 | 1.1E-34 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 637 | 921 | 4.1E-54 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 298 | 539 | 1.0E-64 | - |
| SMART | SM00695 | dusp | 31 | 142 | 2.1E-26 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 12 | 139 | 18.331753 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 314 | 914 | 55.653236 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 856 | 873 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 315 | 330 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_021859139.1 | ubiquitin carboxyl-terminal hydrolase 5 [Spinacia oleracea] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QI07 | Ubiquitin carboxyl-terminal hydrolase OS=Spinacia oleracea OX=3562 GN=SOVF_183250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology