Basic Information
Locus ID:
Sbi_jg50516
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000026l | 22318849 | 22320586 | + | Sbi_jg50516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.24 | 63,193.46 Da | 29.03 | 77.84 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 41 | 1.7E-4 | IPR001810 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 46 | 1.2E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 542 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021757127.1 | probable F-box protein At1g65740 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LZD6 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_16244, gene_21745, gene_21763, gene_26530 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah008814, Ah008815, Ah008816, Ah008817 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g076820, BVRB_9g224050 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg50516 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl23194, Sgl23396, Sgl23397, Sgl23398, Sgl28512, Sgl28513 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.3AG0013410, CQ.Regalona.r1.3AG0025460 ... |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG02.1509, evm.TU.LG02.1510, evm.TU.LG02.1512 ... |