Basic Information
Locus ID:
Sbi_jg50495
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING finger domain protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000026l | 21889079 | 21893494 | - | Sbi_jg50495 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 49,921.40 Da | 48.95 | 91.16 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 403 | 444 | 1.20699E-16 | - |
| Pfam | PF13639 | Ring finger domain | 402 | 444 | 2.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 402 | 445 | 3.83E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 383 | 448 | 1.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 403 | 443 | 5.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 403 | 444 | 12.54829 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42940.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010690615.2 | probable E3 ubiquitin-protein ligase HIP1 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FMM4 | Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A444ESN1 | RING-type domain-containing protein OS=Ensete ventricosum OX=4639 GN=GW17_00022915 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg50495, Sbi_jg50496 |