Basic Information
Locus ID:
Sbi_jg50492
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000026l | 21820708 | 21822192 | + | Sbi_jg50492 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 56,010.43 Da | 37.24 | 105.69 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 25 | 58 | 2.9E-6 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 86 | 418 | 2.38E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 60 | 1.18E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 116 | 381 | 5.9E-6 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 64 | 2.7E-5 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 23 | 89 | 8.517177 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51370.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_021765764.1 | F-box/LRR-repeat protein 13-like [Chenopodium quinoa] | 0 |
| Q6DBN6 | F-box/FBD/LRR-repeat protein At1g51370 OS=Arabidopsis thaliana OX=3702 GN=At1g51370 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LUC7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg40480, Sbi_jg50491, Sbi_jg50492 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2070 |