Basic Information
Locus ID:
Sbi_jg50252
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000026l | 16737131 | 16746940 | - | Sbi_jg50252 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.88 | 41,033.91 Da | 59.09 | 88.87 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 77 | 159 | 4.5E-27 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 2 | 72 | 6.28E-6 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 169 | 3.6E-5 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 5 | 71 | 10.633594 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 1 | 186 | 31.887115 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 276 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22104.2 | - | 0 |
| RefSeq | XP_019102803.2 | BTB/POZ domain-containing protein At3g22104 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C5J4 | BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana OX=3702 GN=At3g22104 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8B6E6 | NPH3 domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_8g201910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 53 | Sbi_jg10635, Sbi_jg10720, Sbi_jg1293, Sbi_jg13061 ... |