Basic Information
Locus ID:
Sbi_jg5007
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000002l | 12791302 | 12792760 | + | Sbi_jg5007 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.15 | 10,055.15 Da | 35.26 | 92.15 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 19 | 89 | 1.67586E-30 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 18 | 87 | 2.1E-30 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 19 | 89 | 8.57E-26 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 19 | 92 | 5.7E-34 | - |
| SMART | SM01376 | eIF_5a_2 | 18 | 87 | 1.7E-33 | IPR020189 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69410.1 | eukaryotic elongation factor 5A-3. Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 0 |
| RefSeq | XP_006650623.1 | eukaryotic translation initiation factor 5A [Oryza brachyantha] | 0 |
| Q9SC12 | Eukaryotic translation initiation factor 5A OS=Senecio vernalis OX=93496 GN=EIFSV1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9DC89 | Eukaryotic translation initiation factor 5A OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology