Basic Information
Locus ID:
Sbi_jg50013
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000026l | 9971135 | 9979186 | - | Sbi_jg50013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 146,091.47 Da | 39.85 | 105.42 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 453 | 655 | 1.29117E-111 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 132 | 427 | 1.11563E-74 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 754 | 1047 | 7.48732E-84 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1070 | 1290 | 1.9152E-118 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 755 | 1003 | 1.0E-28 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 134 | 406 | 2.8E-20 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 473 | 607 | 5.4E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1089 | 1237 | 1.2E-29 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 751 | 1054 | 4.32E-48 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 464 | 680 | 6.41E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 123 | 434 | 4.45E-28 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1063 | 1298 | 8.04E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1055 | 1308 | 1.4E-77 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 432 | 695 | 8.8E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 718 | 1053 | 2.2E-60 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 121 | 431 | 1.2E-39 | IPR036640 |
| SMART | SM00382 | AAA_5 | 482 | 655 | 1.1E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1098 | 1290 | 1.4E-10 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1074 | 1306 | 17.060293 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 131 | 419 | 26.167068 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 755 | 1035 | 31.56134 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 453 | 678 | 21.615425 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 580 | 594 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13100.1 | multidrug resistance-associated protein 7. member of MRP subfamily | 0 |
| RefSeq | XP_021752684.1 | ABC transporter C family member 3-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LK62 | ABC transporter C family member 7 OS=Arabidopsis thaliana OX=3702 GN=ABCC7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KUU3 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology