halophFGD

Basic Information

Locus ID: Sbi_jg49857

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: recognition of pollen

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000026l	4373484	4387258	-	Sbi_jg49857

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.27	41,401.91 Da	45.52	90.21	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	248	348	3.7E-7	IPR001245
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	160	242	2.0E-15	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	145	366	1.05E-40	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	232	355	5.4E-22	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	123	231	5.3E-33	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	157	376	13.884548	IPR000719
MobiDBLite	mobidb-lite	consensus disorder prediction	48	70	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	24	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23180.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 10. Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)
RefSeq	XP_021766963.1	putative receptor-like protein kinase At4g00960 isoform X3 [Chenopodium quinoa]
Swiss-Prot	Q8GYA4	Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CRK10 PE=1 SV=3
TrEMBL	A0A803NDA4	Cysteine-rich receptor-like protein kinase 25 OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	13	Sbi_jg12903, Sbi_jg25532, Sbi_jg25533, Sbi_jg32728 ... Sbi_jg35493, Sbi_jg44237, Sbi_jg44450, Sbi_jg49857, Sbi_jg50624, Sbi_jg5151, Sbi_jg5269, Sbi_jg63686, Sbi_jg9650
Amaranthaceae	Salicornia europaea	2	Seu_jg10907, Seu_jg19000