Basic Information
Locus ID:
Sbi_jg49407
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000032l | 6869496 | 6879527 | + | Sbi_jg49407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 93,568.18 Da | 47.98 | 81.78 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 759 | 800 | 1.16705E-22 | - |
| CDD | cd01989 | STK_N | 37 | 174 | 2.33943E-37 | - |
| Pfam | PF00069 | Protein kinase domain | 478 | 724 | 1.1E-42 | IPR000719 |
| Pfam | PF04564 | U-box domain | 755 | 820 | 1.7E-17 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 449 | 727 | 5.26E-71 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 754 | 820 | 2.12E-22 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 32 | 145 | 3.52E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 546 | 748 | 1.2E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 458 | 545 | 3.6E-29 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 19 | 168 | 4.1E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 753 | 828 | 9.0E-28 | IPR013083 |
| SMART | SM00220 | serkin_6 | 473 | 734 | 8.8E-38 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 758 | 821 | 2.7E-27 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 473 | 738 | 35.043144 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 754 | 828 | 38.303646 | IPR003613 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 479 | 500 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 591 | 603 | - | IPR008271 |
| Coils | Coil | Coil | 417 | 451 | - | - |
| Coils | Coil | Coil | 326 | 346 | - | - |
| Coils | Coil | Coil | 354 | 374 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_021767019.1 | U-box domain-containing protein 33-like [Chenopodium quinoa] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M2X4 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology