Basic Information
Locus ID:
Sbi_jg49089
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000032l | 1761966 | 1763360 | + | Sbi_jg49089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 51,319.62 Da | 48.77 | 78.34 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 24 | 203 | 2.7E-36 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 292 | 337 | 6.9E-11 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 291 | 352 | 3.27E-17 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 284 | 355 | 1.1E-15 | IPR036638 |
| SMART | SM00353 | finulus | 294 | 343 | 1.7E-14 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 288 | 337 | 16.246798 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 256 | - | - |
| Coils | Coil | Coil | 334 | 354 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00870.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. | 0 |
| RefSeq | XP_021767200.1 | transcription factor MYC2-like [Chenopodium quinoa] | 0 |
| O23090 | Transcription factor bHLH14 OS=Arabidopsis thaliana OX=3702 GN=BHLH14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M360 | BHLH domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology