Basic Information
Locus ID:
Sbi_jg47968
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000003l | 54425795 | 54426597 | - | Sbi_jg47968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 17,195.80 Da | 16.85 | 104.59 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 67 | 130 | 1.2E-16 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 131 | 1.01E-27 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 65 | 129 | 4.6E-21 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 35 | 2.3E-6 | - |
| SMART | SM00220 | serkin_6 | 1 | 144 | 5.9E-5 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 148 | 14.407506 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26751.1 | shaggy-related kinase 11. encodes a SHAGGY-related kinase involved in meristem organization. | 0 |
| RefSeq | XP_021836651.1 | shaggy-related protein kinase NtK-1-like [Spinacia oleracea] | 0 |
| P43288 | Shaggy-related protein kinase alpha OS=Arabidopsis thaliana OX=3702 GN=ASK1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6A5P5B0 | non-specific serine/threonine protein kinase OS=Lupinus albus OX=3870 GN=Lal_00036423 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg47968 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2BG0006720 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2063.V1.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr22G015720 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003968, gene-LOC107030055 |