Basic Information
Locus ID:
Sbi_jg47935
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000003l | 52904051 | 52908933 | + | Sbi_jg47935 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 65,042.23 Da | 46.77 | 90.45 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 16 | 55 | 5.5E-19 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 75 | 121 | 2.4E-22 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 38 | 543 | 3.92E-34 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 50 | 5.23E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 56 | 580 | 4.1E-173 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 54 | 5.8E-18 | - |
| SMART | SM00367 | LRR_CC_2 | 489 | 513 | 32.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 113 | 137 | 370.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 440 | 463 | 58.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 138 | 163 | 60.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 322 | 345 | 100.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 18 | 59 | 0.0016 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 380 | 404 | 24.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 192 | 218 | 730.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 59 | 8.543671 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010686279.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QY36 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_133610 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology