Basic Information
Locus ID:
Sbi_jg47444
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000003l | 28795373 | 28796182 | + | Sbi_jg47444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 30,400.83 Da | 45.55 | 78.25 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 175 | 217 | 3.45868E-15 | - |
| Pfam | PF13639 | Ring finger domain | 174 | 217 | 3.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 224 | 7.83E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 222 | 4.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 175 | 216 | 3.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 175 | 217 | 12.740079 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 269 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010690208.2 | E3 ubiquitin-protein ligase RING1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QED1 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_194000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg10876, Sbi_jg47444 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21691 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018752 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55618, Sgl60828 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018204, gene:ENSEOMG00000038713 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0027790, CQ.Regalona.r1.7BG0001610 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG15.1210 |