Basic Information
Locus ID:
Sbi_jg47183
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000003l | 21067080 | 21083201 | + | Sbi_jg47183 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 202,727.88 Da | 48.40 | 84.26 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1459 | 1881 | 3.6422E-116 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1507 | 1886 | 7.4E-79 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 176 | 646 | 3.53E-39 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1452 | 1879 | 1.31E-91 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 165 | 486 | 2.4E-50 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1401 | 1648 | 3.3E-43 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1759 | 1884 | 1.9E-32 | - |
| SMART | SM00119 | hect_3 | 1470 | 1886 | 8.8E-74 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1483 | 1886 | 53.235203 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1528 | 1553 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 956 | 1081 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1067 | 1081 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1128 | 1163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1041 | 1066 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1268 | 1302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 654 | 692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1533 | 1547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1278 | 1299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1126 | 1163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 958 | 1009 | - | - |
| Coils | Coil | Coil | 86 | 106 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_010690374.2 | E3 ubiquitin-protein ligase UPL3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9A0 | HECT-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_097120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology