Basic Information
Locus ID:
Sbi_jg47069
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000003l | 18457798 | 18459411 | + | Sbi_jg47069 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 60,047.81 Da | 33.86 | 94.77 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 385 | 408 | 0.098 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 181 | 205 | 0.22 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 80 | 103 | 0.34 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 309 | 357 | 1.4E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 108 | 138 | 1.6E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 209 | 239 | 6.8E-4 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 109 | 470 | 5.69E-9 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 156 | 271 | 1.3E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 7 | 155 | 2.3E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 279 | 520 | 6.1E-39 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 347 | 381 | 4.7E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 312 | 339 | 7.9E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 209 | 242 | 0.0022 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 108 | 141 | 1.1E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 310 | 344 | 11.936913 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 106 | 140 | 10.128299 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 345 | 380 | 8.845827 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11290.1 | Pentatricopeptide repeat (PPR) superfamily protein. Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity. | 0 |
| RefSeq | XP_021753145.1 | putative pentatricopeptide repeat-containing protein At3g01580 [Chenopodium quinoa] | 0 |
| Q3E6Q1 | Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9Q9E9 | DYW_deaminase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_204900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah009743 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12129, Sbi_jg47069 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21351 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020368 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl61527, Sgl61549 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000040006 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0003540, CQ.Regalona.r1.9AG0021020 |
| Apiaceae | Apium graveolens | 1 | Ag11G04930 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0007 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1072, evm.TU.LG12.90 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1195, evm.TU.LG22.952 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16620 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.926 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16686, nbisL1-mrna-16759 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10433 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17232 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000025l.48 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012187 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-20187, nbisL1-mrna-20188, nbisL1-mrna-20591 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-9137, nbisL1-mrna-9139, nbisL1-mrna-9140 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1063 |
| Zosteraceae | Zostera marina | 3 | Zosma03g32740.v3.1, Zosma03g32750.v3.1, Zosma03g32810.v3.1 |