Basic Information
Locus ID:
Sbi_jg46904
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000003l | 15976494 | 15981461 | + | Sbi_jg46904 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 94,490.84 Da | 63.17 | 66.50 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 786 | 824 | 5.20355E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 784 | 830 | 2.9E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 773 | 831 | 5.3E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 769 | 837 | 3.1E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 786 | 825 | 10.025527 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 707 | - | - |
| Coils | Coil | Coil | 714 | 741 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_021732900.1 | uncharacterized protein LOC110699684 [Chenopodium quinoa] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M6F8 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology