Basic Information
Locus ID:
Sbi_jg46783
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
B3 domain-containing protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000003l | 13666250 | 13667563 | + | Sbi_jg46783 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 50,521.84 Da | 41.36 | 87.30 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 53 | 1.7E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 97 | 4.19E-11 | IPR036047 |
| SMART | SM00256 | fbox_2 | 16 | 57 | 1.3E-4 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 437 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010691770.2 | F-box protein At4g22390 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RC38 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_087520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 12 | Ah008721, Ah008722, Ah010459, Ah010460, Ah010461, Ah010463 ... |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg18919, Sbi_jg37371, Sbi_jg46783 |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg20868, Seu_jg20869, Seu_jg495, Seu_jg5210 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7BG0009470 |