Basic Information
Locus ID:
Sbi_jg4572
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000014l | 8319234 | 8330347 | - | Sbi_jg4572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 61,181.43 Da | 46.31 | 74.19 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 12 | 60 | 1.68471E-10 | - |
| Pfam | PF13639 | Ring finger domain | 11 | 60 | 4.0E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 64 | 6.45E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 186 | 3.8E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 12 | 59 | 2.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 12 | 60 | 12.902362 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 374 | - | - |
| Coils | Coil | Coil | 114 | 141 | - | - |
| Coils | Coil | Coil | 258 | 292 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010669839.2 | E3 ubiquitin-protein ligase TRAIP isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QIT7 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_180480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11087, jg1957 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23584 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022939 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004030 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4572, Sbi_jg49261 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5979 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000501 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11018, Sgl16426 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012842, gene:ENSEOMG00000034091 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003430, CQ.Regalona.r1.2BG0025390 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30004990 |
| Apiaceae | Apium graveolens | 1 | Ag1G00213 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G002350 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712436 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.275.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G19764, Ftri3G12159 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G01245.1, AT4G01270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029490m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB08g041490.2N, BniB08g041550.2N, BniB08g043120.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1194 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1235 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g07320 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g06030 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.800 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039269 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11133 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0644930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0700930.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_032504, gene-QYE76_032521 |
| Poaceae | Oryza coarctata | 2 | Oco15G002070, Oco16G002110 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g05560.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G042700 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr16G001160, Chr17G001100, Chr20G010760, Chr29G011600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G525500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG042460, gene_TRIDC7BG033590 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G304100.2, TraesCS7B02G204500.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb416420_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-41571 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23611 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2230, evm.TU.LG06.76 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17920 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.447 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10791, nbisL1-mrna-10807 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6532 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10386 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.462 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013144 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10279 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7204 |
| Salicaceae | Populus euphratica | 1 | populus_peu27644 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132640656, gene-LOC132645528 |
| Solanaceae | Solanum chilense | 2 | SOLCI005420800, SOLCI006486200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007582, gene-LOC107018464 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.28986_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2194 |