halophFGD

Basic Information

Locus ID: Sbi_jg45375

Species & Taxonomic ID: Salicornia bigelovii & 46105

Genome Assembly:

Description: RING-H2 finger protein ATL47-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000033l	13153087	13155718	-	Sbi_jg45375

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.39	29,183.14 Da	64.18	81.95	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13920	Zinc finger, C3HC4 type (RING finger)	153	199	1.6E-9	-
SUPERFAMILY	SSF57850	RING/U-box	145	199	1.99E-14	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	113	219	7.1E-15	IPR013083
SMART	SM00184	ring_2	156	193	2.3E-6	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	156	194	12.297489	IPR001841
Coils	Coil	Coil	111	131	-	-
Coils	Coil	Coil	8	28	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT5G01520.1	RING/U-box superfamily protein.
RefSeq	XP_010682387.2	E3 ubiquitin-protein ligase AIRP2 isoform X1 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q9M022	E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1
TrEMBL	A0A803L111	RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg20331, jg22007, jg32168, jg32504, jg3267, jg34562, jg9543 ... jg9545
Aizoaceae	Mesembryanthemum crystallinum	5	gene_18051, gene_338, gene_3552, gene_5474, gene_5797
Amaranthaceae	Atriplex hortensis	6	Ah013815, Ah013818, Ah018001, Ah020440, Ah027853, Ah028524
Amaranthaceae	Beta vulgaris	4	BVRB_6g147640, BVRB_6g147670, BVRB_7g172300, BVRB_8g183460
Amaranthaceae	Salicornia bigelovii	10	Sbi_jg1597, Sbi_jg26209, Sbi_jg26719, Sbi_jg33844 ... Sbi_jg34964, Sbi_jg42751, Sbi_jg42755, Sbi_jg45375, Sbi_jg45378, Sbi_jg9983
Amaranthaceae	Salicornia europaea	5	Seu_jg11237, Seu_jg11239, Seu_jg15230, Seu_jg22365 ... Seu_jg3153
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00002558, GOSA_00002559, GOSA_00003351, GOSA_00011762 ... GOSA_00027940
Amaranthaceae	Suaeda glauca	11	Sgl35117, Sgl35119, Sgl40496, Sgl40498, Sgl45902, Sgl50601 ... Sgl72775, Sgl74024, Sgl76314, Sgl77132, Sgl77528
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000002421, gene:ENSEOMG00000006977 ... gene:ENSEOMG00000009990, gene:ENSEOMG00000012357, gene:ENSEOMG00000015386, gene:ENSEOMG00000024239, gene:ENSEOMG00000025599, gene:ENSEOMG00000032505, gene:ENSEOMG00000036362, gene:ENSEOMG00000038904, gene:ENSEOMG00000041491, gene:ENSEOMG00000042413, gene:ENSEOMG00000047111
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.6BG0003710, CQ.Regalona.r1.7AG0004200 ... CQ.Regalona.r1.7AG0008480, CQ.Regalona.r1.8AG0004960, CQ.Regalona.r1.8BG0005140, CQ.Regalona.r1.9BG0001450, CQ.Regalona.r1.9BG0008500
Anacardiaceae	Pistacia vera	7	pistato.v30061540, pistato.v30073360, pistato.v30140650 ... pistato.v30227830, pistato.v30227860, pistato.v30269990, pistato.v30285830
Apiaceae	Apium graveolens	8	Ag10G00913, Ag2G01098, Ag6G00275, Ag6G00276, Ag6G01003 ... Ag7G00734, Ag8G02251, Ag8G02253
Arecaceae	Cocos nucifera	5	COCNU_07G012570, COCNU_08G003500, COCNU_09G007170 ... COCNU_11G002010, scaffold000755G000020
Arecaceae	Phoenix dactylifera	5	gene-LOC103698155, gene-LOC103700497, gene-LOC103712490 ... gene-LOC103716193, gene-LOC103719193
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.922.V1.1, AsparagusV1_04.3449.V1.1 ... AsparagusV1_04.586.V1.1, AsparagusV1_07.2211.V1.1
Asteraceae	Flaveria trinervia	8	Ftri11G04557, Ftri15G02091, Ftri15G22141, Ftri18G01731 ... Ftri5G13490, Ftri8G29725, Ftri9G10876, Ftri9G33355
Brassicaceae	Arabidopsis thaliana	5	AT1G13195.1, AT1G24440.1, AT3G47160.2, AT5G01520.1 ... AT5G58787.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10008511m.g.v1.0, Thhalv10008563m.g.v1.0 ... Thhalv10010665m.g.v1.0, Thhalv10014521m.g.v1.0, Thhalv10014523m.g.v1.0, Thhalv10026811m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g11720.v2.2, Sp1g23360.v2.2, Sp5g14610.v2.2 ... Sp6g20490.v2.2, Sp6g40800.v2.2
Brassicaceae	Brassica nigra	10	BniB01g021110.2N, BniB02g008070.2N, BniB02g038220.2N ... BniB03g017940.2N, BniB03g032420.2N, BniB04g027800.2N, BniB04g041540.2N, BniB08g000270.2N, BniB08g012950.2N, BniB08g060010.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq01G2307, Ceq04G0430, Ceq07G1299, Ceq07G1301, Ceq08G1028 ... Ceq08G1887
Casuarinaceae	Casuarina glauca	6	Cgl01G2616, Cgl04G0527, Cgl07G1372, Cgl07G1374, Cgl08G1049 ... Cgl08G1941
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g09340, gene.Cymno08g00270, gene.Cymno14g00420
Dunaliellaceae	Dunaliella salina	1	Dusal.0195s00012.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g06450, gene.Thate03g09690, gene.Thate04g23510 ... gene.Thate09g12460
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11096, nbisL1-mrna-3466, nbisL1-mrna-5494
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1029, evm.TU.LG03.691, evm.TU.LG09.1103 ... evm.TU.LG12.976
Plantaginaceae	Plantago ovata	5	Pov_00002755, Pov_00018555, Pov_00022257, Pov_00034791 ... Pov_00038238
Plumbaginaceae	Limonium bicolor	7	Lb1G00099, Lb1G00103, Lb4G24761, Lb4G25109, Lb5G26938 ... Lb5G29486, Lb6G30674
Poaceae	Echinochloa crus-galli	18	AH01.1690, AH01.1996, AH02.4229, AH03.3974, AH07.1445 ... AH09.2727, BH01.1889, BH01.2229, BH02.4257, BH03.4291, BH03.949, BH09.2968, CH01.1995, CH01.2328, CH02.4287, CH03.1108, CH07.1933, CH07.219
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_1AG0043530, gene-QOZ80_1BG0093550 ... gene-QOZ80_2AG0112620, gene-QOZ80_2AG0126070, gene-QOZ80_2BG0165990, gene-QOZ80_2BG0181850, gene-QOZ80_4AG0299210, gene-QOZ80_4BG0329880, gene-QOZ80_7AG0562930, gene-QOZ80_7AG0580410, gene-QOZ80_7BG0611590
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0039160.2, HORVU.MOREX.r3.1HG0047500.1 ... HORVU.MOREX.r3.2HG0116390.2, HORVU.MOREX.r3.2HG0209030.1, HORVU.MOREX.r3.2HG0209060.2, HORVU.MOREX.r3.3HG0304720.1
Poaceae	Lolium multiflorum	5	gene-QYE76_011346, gene-QYE76_011841, gene-QYE76_039039 ... gene-QYE76_047641, gene-QYE76_057184
Poaceae	Oryza coarctata	11	Oco01G027680, Oco02G028770, Oco07G019420, Oco08G018680 ... Oco13G014970, Oco14G005810, Oco14G015820, Oco19G005080, Oco19G007270, Oco20G005000, Oco20G007180
Poaceae	Oryza sativa	6	LOC_Os01g67850.1, LOC_Os04g58320.2, LOC_Os07g17400.1 ... LOC_Os07g46700.1, LOC_Os10g30850.1, LOC_Os10g35670.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G186700, gene-BS78_01G221500 ... gene-BS78_02G121300, gene-BS78_02G379800, gene-BS78_03G372300, gene-BS78_06G285900
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0100275, Pt_Chr0300073, Pt_Chr0305096, Pt_Chr0307106 ... Pt_Chr0502472, Pt_Chr0502812, Pt_Chr0502817, Pt_Chr0600329, Pt_Chr0600373
Poaceae	Sporobolus alterniflorus	23	Chr03G022170, Chr05G031180, Chr06G013650, Chr06G030130 ... Chr08G019840, Chr09G002040, Chr09G010180, Chr0G020980, Chr0G021350, Chr0G024370, Chr0G031420, Chr13G014950, Chr15G014350, Chr15G021450, Chr19G000780, Chr19G015400, Chr24G007020, Chr24G013150, Chr25G014990, Chr27G000790, Chr27G016710, Chr28G006470, Chr30G000630
Poaceae	Thinopyrum elongatum	13	Tel1E01G262700, Tel1E01G308900, Tel2E01G264600 ... Tel2E01G970700, Tel2E01G971100, Tel2E01G971200, Tel3E01G408000, Tel3E01G408100, Tel3E01G620100, Tel3E01G638100, Tel5E01G553600, Tel5E01G553700, Tel6E01G198900
Poaceae	Triticum dicoccoides	16	gene_TRIDC1AG021330, gene_TRIDC1AG025790 ... gene_TRIDC1BG026220, gene_TRIDC1BG031230, gene_TRIDC1BG072470, gene_TRIDC2AG015610, gene_TRIDC2AG078490, gene_TRIDC2AG078530, gene_TRIDC2BG008800, gene_TRIDC2BG018770, gene_TRIDC2BG086550, gene_TRIDC2BG086660, gene_TRIDC3AG055750, gene_TRIDC3BG062410, gene_TRIDC4BG014030, gene_TRIDC7AG056130
Poaceae	Triticum aestivum	15	TraesCS1A02G141900.1, TraesCS1A02G169300.1 ... TraesCS1B02G159800.2, TraesCS1B02G187600.1, TraesCS1D02G141000.1, TraesCS1D02G167300.1, TraesCS2A02G126800.2, TraesCS2A02G586800.1, TraesCS2B02G148700.1, TraesCS2B02G596600.1, TraesCS2D02G129300.2, TraesCS2D02G599700.1, TraesCS3A02G391400.1, TraesCS3B02G423300.1, TraesCS3D02G384200.1
Poaceae	Zea mays	12	Zm00001eb044410_P001, Zm00001eb044480_P001 ... Zm00001eb047060_P001, Zm00001eb065980_P001, Zm00001eb095050_P001, Zm00001eb110910_P001, Zm00001eb144260_P001, Zm00001eb162170_P001, Zm00001eb304990_P001, Zm00001eb358280_P001, Zm00001eb378040_P001, Zm00001eb433880_P002
Poaceae	Zoysia japonica	9	nbis-gene-11076, nbis-gene-166, nbis-gene-21293 ... nbis-gene-33185, nbis-gene-42490, nbis-gene-43965, nbis-gene-45330, nbis-gene-48076, nbis-gene-6211
Poaceae	Zoysia macrostachya	9	Zma_g11751, Zma_g12696, Zma_g13315, Zma_g15213, Zma_g22240 ... Zma_g5015, Zma_g5727, Zma_g7017, Zma_g9215
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.1380, evm.TU.LG12.24, evm.TU.LG13.108 ... evm.TU.LG13.110, evm.TU.LG18.1841, evm.TU.LG19.294, evm.TU.LG20.65, evm.TU.LG24.521
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g14610, gene.Posoc05g00730, gene.Posoc05g00950 ... gene.Posoc06g04380
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.60444.14, evm.TU.Scaffold_11_RagTag.1117 ... evm.TU.Scaffold_12_RagTag.135, evm.TU.Scaffold_13_RagTag.921, evm.TU.Scaffold_15_RagTag.824, evm.TU.Scaffold_17_RagTag.12, evm.TU.Scaffold_1_RagTag.1805
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-12280, nbisL1-mrna-23181, nbisL1-mrna-24663 ... nbisL1-mrna-27012, nbisL1-mrna-27014, nbisL1-mrna-27199, nbisL1-mrna-27201, nbisL1-mrna-28978, nbisL1-mrna-30095, nbisL1-mrna-5595
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-11625, nbisL1-mrna-1394, nbisL1-mrna-14236 ... nbisL1-mrna-15662, nbisL1-mrna-850, nbisL1-mrna-9293
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-12667, nbisL1-mrna-14687, nbisL1-mrna-15578 ... nbisL1-mrna-16288, nbisL1-mrna-1923, nbisL1-mrna-19445, nbisL1-mrna-3706
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000001l.452, evm.TU.utg000008l.255 ... evm.TU.utg000010l.174, evm.TU.utg000013l.108, evm.TU.utg000015l.544, evm.TU.utg000016l.691, evm.TU.utg000027l.484
Rhizophoraceae	Kandelia obovata	7	Maker00000647, Maker00002692, Maker00006749, Maker00008840 ... Maker00015865, Maker00016781, Maker00017855
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-11207, nbisL1-mrna-14652, nbisL1-mrna-4448 ... nbisL1-mrna-4961, nbisL1-mrna-5505, nbisL1-mrna-686, nbisL1-mrna-7018
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-11667, nbisL1-mrna-13756, nbisL1-mrna-1389 ... nbisL1-mrna-15940, nbisL1-mrna-17697, nbisL1-mrna-20862, nbisL1-mrna-8748
Salicaceae	Populus euphratica	10	populus_peu02012, populus_peu02017, populus_peu10083 ... populus_peu11425, populus_peu18203, populus_peu21712, populus_peu25485, populus_peu28788, populus_peu30210, populus_peu35798
Solanaceae	Lycium barbarum	6	gene-LOC132607007, gene-LOC132621753, gene-LOC132631304 ... gene-LOC132632531, gene-LOC132641210, gene-LOC132641215
Solanaceae	Solanum chilense	6	SOLCI002555000, SOLCI002604800, SOLCI004732900 ... SOLCI005717000, SOLCI007123700, SOLCI007127500
Solanaceae	Solanum pennellii	6	gene-LOC107011064, gene-LOC107013787, gene-LOC107018631 ... gene-LOC107018681, gene-LOC107032320, gene-LOC107032414
Tamaricaceae	Reaumuria soongarica	7	STRG.22289_chr09_+, gene_10393, gene_2733, gene_3373 ... gene_3635, gene_4367, gene_6871
Tamaricaceae	Tamarix chinensis	7	TC02G1774, TC04G0428, TC07G2155, TC08G2584, TC11G0381 ... TC11G0386, TC11G1189
Zosteraceae	Zostera marina	4	Zosma01g05310.v3.1, Zosma03g16840.v3.1, Zosma05g08150.v3.1 ... Zosma05g24170.v3.1