Basic Information
Locus ID:
Sbi_jg45323
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000033l | 12461535 | 12470126 | + | Sbi_jg45323 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 69,199.54 Da | 49.99 | 79.08 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 146 | 417 | 1.65069E-39 | - |
| Pfam | PF02338 | OTU-like cysteine protease | 467 | 592 | 3.9E-23 | IPR003323 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 162 | 220 | 2.4E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 279 | 6.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 382 | 417 | 0.0023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 332 | 0.0073 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 135 | 417 | 5.31E-58 | IPR036322 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 462 | 596 | 8.24E-18 | IPR038765 |
| Gene3D | G3DSA:3.90.70.80 | - | 442 | 601 | 8.5E-32 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 73 | 420 | 2.6E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 198 | 236 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 378 | 417 | 6.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 375 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 290 | 332 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 279 | 5.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 195 | 4.3E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 288 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 385 | 418 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 195 | 8.966513 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 385 | 418 | 9.99469 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 247 | 279 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 204 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50802 | OTU domain profile. | 461 | 599 | 13.339413 | IPR003323 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 404 | 418 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010671158.1 | cell division cycle 20.2, cofactor of APC complex [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L226 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology