Basic Information
Locus ID:
Sbi_jg45027
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Short Name:
AFB3
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000033l | 7293579 | 7297020 | - | Sbi_jg45027 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 64,619.39 Da | 41.81 | 97.01 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 108 | 9.3E-24 | IPR041101 |
| Pfam | PF18511 | F-box | 3 | 42 | 3.4E-16 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 25 | 533 | 9.81E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 575 | 1.7E-178 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 4.7E-16 | - |
| SMART | SM00367 | LRR_CC_2 | 100 | 124 | 28.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 368 | 392 | 1.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 21.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 310 | 333 | 41.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 428 | 451 | 320.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 46 | 2.6E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 477 | 502 | 210.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_021849980.1 | protein AUXIN SIGNALING F-BOX 2-like [Spinacia oleracea] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2R4K3H4 | F-box protein OS=Bassia scoparia OX=83154 GN=AFB2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology