Basic Information
Locus ID:
Sbi_jg44857
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000033l | 4164387 | 4165481 | + | Sbi_jg44857 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 40,195.97 Da | 43.78 | 84.09 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 126 | 169 | 4.01976E-20 | - |
| Pfam | PF13639 | Ring finger domain | 126 | 169 | 1.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 106 | 175 | 5.55E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 174 | 1.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 127 | 168 | 1.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 169 | 12.238477 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010682597.2 | RING-H2 finger protein ATL46 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9REU5 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_074130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology