Basic Information
Locus ID:
Sbi_jg43938
Species & Taxonomic ID:
Salicornia bigelovii & 46105
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000013l | 13515328 | 13516853 | + | Sbi_jg43938 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.72 | 45,435.30 Da | 61.10 | 57.17 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 341 | 383 | 2.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 341 | 386 | 4.54E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 311 | 387 | 5.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 342 | 382 | 8.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 342 | 383 | 12.725326 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 182 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021288665.1 | E3 ubiquitin-protein ligase arkadia [Herrania umbratica] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J8QPH4 | RING-type domain-containing protein OS=Gossypium raimondii OX=29730 GN=Gorai_003192 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19360, Sbi_jg43938 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg18002, Seu_jg18003 |